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Caminibacter - Wikipedia

From Wikipedia, the free encyclopedia

Caminibacter
Scientific classification
Domain:	Bacteria
Phylum:	Campylobacterota
Class:	"Nautiliia"
Order:	Nautiliales
Family:	Nautiliaceae
Genus:	Caminibacter Alain et al. 2002^[1]
Type species
Caminibacter hydrogeniphilus Alain et al. 2002
Species
C. hydrogeniphilus C. mediatlanticus C. profundus

Caminibacter is a genus of anaerobic and thermophilic bacteria from the family Nautiliaceae.^[1]^[2]^[3]^[4]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)^[5] and National Center for Biotechnology Information (NCBI)^[6]

16S rRNA based LTP_08_2023^[7]^[8]^[9]

Caminibacter

C. profundus Miroshnichenko et al. 2004

	C. hydrogeniphilus Alain et al. 2002

	C. mediatlanticus Voordeckers et al. 2005

References

^ ^a ^b LPSN lpsn.dsmz.de
^ Brenner, Don J.; Krieg, Noel R.; Staley, James T., eds. (2005). Bergey's manual of systematic bacteriology (2nd ed.). New York: Springer. ISBN 0-387-29298-5.
^ UniProt
^ Bell, Elanor M., ed. (2012). Life at extremes : environments, organisms, and strategies for survival. Wallingford, Oxfordshire, UK: CAB International. ISBN 978-1-84593-814-7.
^ A.C. Parte; et al. "Caminibacter". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2023-09-09.
^ Sayers; et al. "Caminibacter". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2023-09-09.
^ "The LTP". Retrieved 20 November 2023.
^ "LTP_all tree in newick format". Retrieved 20 November 2023.
^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.

Giovannelli, Donato; Ferriera, Steven; Johnson, Justin; Kravitz, Saul; Pérez-Rodríguez, Ileana; Ricci, Jessica; O'Brien, Charles; Voordeckers, James W.; Bini, Elisabetta; Vetriani, Costantino (23 September 2011). "Draft genome sequence of Caminibacter mediatlanticus strain TB-2T, an epsilonproteobacterium isolated from a deep-sea hydrothermal vent". Standards in Genomic Sciences. 5 (1): 135–143. doi:10.4056/sigs.2094859. PMC 3236049. PMID 22180817.
Satyanarayana, T.; Johri, B.N. (2005). Microbial diversity : current perspectives and potential applications. Reading: Paths. ISBN 81-88237-43-4.
Ward, Bess B.; Arp, Daniel J.; Klotz, Martin G. (2011). Nitrification. Washington, DC: ASM Press. ISBN 978-1-55581-481-6.
Moir, James W.B., ed. (2011). Nitrogen cycling in bacteria : molecular analysis. Norfolk: Caister Academic Press. ISBN 978-1-904455-86-8.

Prokaryotes: Bacteria classification

(major groups

Terrabacteria
BV1, BV3, BV5

others	Actinomycetota Acidimicrobiia Actinomycetia "Aquicultoria" Coriobacteriia "Geothermincolia" "Humimicrobiia" Rubrobacteria Thermoleophilia "Bipolaricaulota" "Bipolaricaulia" Chloroflexota "Caldilineia" Chloroflexia Dehalococcoidia Ktedonobacteria "Limnocylindria" Deinococcota "Deinococcia" "Dormiibacterota" "Dormibacteria" Armatimonadota "Abditibacteriia" Armatimonadia Chthonomonadia Fimbriimonadia "Heboniibacteriia" "Zipacnadia" "Eremiobacterota" "Eudoremicrobiia" "Xenobiia" "Eremiobacteria"
Cyanoprokaryota	Cyanobacteriota Cyanobacteria "Sericytochromatia" "Vampirovibrionophyceae" "Margulisiibacteriota" "Marinamargulisbacteria" "Riflemargulisbacteria" "Saganbacteria" "Termititenacia"
Firmicutes BV3 Low GC	Bacillota "Bacillia" Bacillota A "Clostridiia" "Thermoanaerobacteria" "Thermosediminibacteria" Bacillota D "Dethiobacteria" "Natranaerobiia" "Proteinivoracia" Bacillota E "Sulfobacillia" "Symbiobacteriia" "Thermaerobacteria" Bacillota G "Hydrogenisporia" Limnochordia "Desulfotomaculota" "Carboxydocellia" "Carboxydothermia" "Dehalobacteriia" "Desulfitobacteriia" "Desulfotomaculia" "Moorellia" "Peptococcia" "Syntrophomonadia" "Thermincolia" "Halanaerobiaeota" "Halanaerobiia" "Selenobacteria" "Selenomonadia"

CPR group

"Elulota"
- "Elulimicrobia"
"Patescibacteria"
- ABY1
- "Absconditabacteria"
- "Andersenbacteria"
- "Berkelbacteria"
- "Dojkabacteria"
- "Doudnabacteria"
- "Gracilibacteria"
- "Howlettbacteria"
- "Katanobacteria"
- "Kazanbacteria"
- "Microgenomatia"
- "Paceibacteria"
- "Saccharimonadia"
- "Torokbacteria"
- "Wirthbacteria"

Thermotogida

Synergistetes	Atribacterota Atribacteria Synergistota Synergistia
Thermocalda	Caldisericota Caldisericia Coprothermobacterota Coprothermobacteria Dictyoglomerota Dictyoglomeria "Lithacetigenota" "Lithacetigenia" "Thermodesulfobiota" "Thermodesulfobiia" Thermotogota "Thermotogia"

Fusobacterida

Fusobacteriota
- Fusobacteriia
"Macinerneyibacteriota"
- "Macinerneyibacteriia"
"Muiribacteriota"
- "Muiribacteriia"
"Rifleibacteriota"
- "Ozemibacteria"
"Walliibacteriota"

Hydrobacteria
BV2, BV4

Clade 1

"Aerophobota"
- "Aerophobia"
"Auribacterota"
- "Ancaeobacteria"
- "Auribacteria"
- "Erginobacteria"
- "Tritonobacteria"
"Desantisiibacteriota"
Elusimicrobiota
- Elusimicrobiia
- Endomicrobiia
"Firestoneibacteriota"
"Goldiibacteriota"
"Omnitrophota"
- "Omnitrophia"
- "Velamenicoccia"
"Ratteibacteriota"

Clade 2

"Abyssubacteria"
"Hinthialibacterota"
- "Hinthialibacteria"
"Hydrogenedentota"
- "Hydrogenedentia"
"Poribacteriota"
"Saltatorellota"
- "Saltatorellae"
"Sumerlaeota"
- "Sumerlaeia"

Spirochaeto
bacteriobiontes

"Babelota"
- "Babeliae"
"Lindowiibacteriota"
Spirochaetota
- "Brevinematia"
- "Brachyspirae"
- "Exilispiria"
- "Leptospiria"
- "Spirochaetia"

PVC group
(Planctobacteria)

Chlamydiota
- Chlamydiia
Planctomycetota
- "Brocadiia"
- Phycisphaeria
- Planctomycetia
- "Uabimicrobiia"
Verrucomicrobiota
- Kiritimatiellia
- Lentisphaeria
- Verrucomicrobiia

FCB group
(Sphingobacteria)

Bacteroidota
- Bacteroidia
- Chlorobiia
- "Ignavibacteriia"
- "Kapabacteria"
- "Kryptoniia"
- Rhodothermia
Calditrichota
- Calditrichia
"Cloacimonadota"
- "Cloacimonadia"
"Coatesiibacteriota"
"Cosmopoliota"
- "Cosmopolitia"
"Delongiibacteriota"
"Edwardsiibacteriota"
"Eiseniibacteriota"
"Electryoneota"
- "Electryoneia"
- "Tariuqbacteria"
"Fermentibacterota"
- "Fermentibacteria"
Fibrobacterota
- Chitinivibrionia
- Fibrobacteria
- "Raymondbacteriia"
Gemmatimonadota
- Gemmatimonadia
- "Glassbacteria"
"Heilongiota"
- "Heilongiia"
"Hydrothermota"
- "Hydrothermia"
- "Stahlbacteria"
"Krumholzibacteriota"
- "Krumholzibacteriia"
"Latescibacterota"
- "Handelsmanbacteria"
- "Latescibacteria"
"Neomarinimicrobiota"
"Marinisomatota"
- "Marinisomatia"
"Tianyaibacteriota"
"Zixiibacteriota"

Proteobacteria
BV2

Aquificida	"Acidulodesulfobacteriota" "Acidulodesulfobacteriia" Aquificota Aquificia "Desulfurobacteriia" Campylobacterota "Campylobacteria" Desulfurellia "Calescibacteriota" "Calescibacteriia" Chrysiogenota Chrysiogenia "Dadaibacteriota" "Dadabacteria" Deferribacterota "Deferribacteria" Desulfobacterota G Syntrophorhabdia "Thermosulfidibacterota" "Thermosulfidibacteria"
Deltaproteobacteria	Bdellovibrionota Bacteriovoracia Bdellovibrionia Oligoflexia "Binatota" "Binatia" "Deferrimicrobiota" "Anaeroferrophilia" "Deferrimicrobiia" "Deferrisomatota" Deferrisomatia "Desulfuromonadota" Desulfuromonadia "Lernaellota" "Lernaellia" "Methylomirabilota" "Methylomirabilia" "Moduliflexota" "Moduliflexia" Myxococcota Myxococcia "Bradymonadia" Polyangiia Nitrospinota Nitrospinia Nitrospirota Nitrospiria "Thermodesulfovibrionia" SAR324 "Lambdaproteobacteria" "Schekmaniibacteriota" "Tectimicrobiota" "Entotheonellia" "Thermodesulfobacteriota"
others	Acidobacteriota "Acidobacteriia" "Aminicenantia" Blastocatellia "Fischerbacteria" "Guanabaribacteriia" "Holophagia" "Polarisedimenticolia" Thermoanaerobaculia Vicinamibacteria "Canglongiota" "Canglongiia" "Leptospirillaeota" "Leptospirillia" Pseudomonadota "Caulobacteria" "Mariprofundia" "Magnetococcia" "Pseudomonadia"

others

Source: Bergey's Manual (2001–2012)
Alternative views: Wikispecies

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See also

References

Further reading