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  2. World Encyclopedia
  3. NeXML format - Wikipedia
NeXML format - Wikipedia
From Wikipedia, the free encyclopedia
For XML tools for NeXus format used in neutron, x-ray, and muon scattering, see Nexus (data format).
NeXML
Filename extensions.nexml
Internet media typetext/x-nexml+xml
Developed byRutger A. Vos, et al.
Initial release1 July 2012 (13 years ago) (2012-07-01)
Type of formatbioinformatics
Extended fromXML
Open format?Yes
Websitenexml.org

NeXML is an exchange standard for representing phyloinformatic data.[1] It was inspired by the widely used Nexus file format but uses XML to produce a more robust format for rich phylogenetic data. Advantages include syntax validation, semantic annotation, and web services. The format is broadly supported and has libraries in many popular programming languages for bioinformatics.

Key features

  • XML-based syntax with formal schema validation
  • Support for rich, structured metadata
  • Semantic annotation using controlled vocabularies and ontologies
  • Explicit representation of phylogenetic trees, character matrices, and taxa
  • Extensibility without breaking backward compatibility

References

  1. ^ Vos, Rutger A.; Balhoff, James P.; Caravas, Jason A.; Holder, Mark T.; Lapp, Hilmar; Maddison, Wayne P.; Midford, Peter E.; Priyam, Anurag; Sukumaran, Jeet (2012-07-01). "NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata". Systematic Biology. 61 (4): 675–689. doi:10.1093/sysbio/sys025. ISSN 1063-5157. PMC 3376374. PMID 22357728.
Stub icon 1 Stub icon 2

This bioinformatics-related article is a stub. You can help Wikipedia by adding missing information.


Sunting pranala
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