A flagellate is a cell or organism with one or more whip-like appendages called flagella. The word flagellate also describes a particular construction (or level of organization) characteristic of many prokaryotes and eukaryotes and their means of motion. The term presently does not imply any specific relationship or classification of the organisms that possess flagella. However, several derivations of the term "flagellate" (such as "dinoflagellate" and "choanoflagellata") are more formally characterized.^[1]

Flagella in eukaryotes are supported by microtubules in a characteristic arrangement, with nine fused pairs surrounding two central singlets. These arise from a basal body. In some flagellates, flagella direct food into a cytostome or mouth, where food is ingested. Flagella role in classifying eukaryotes.

Among protoctists and microscopic animals, a flagellate is an organism with one or more flagella. Some cells in other animals may be flagellate, for instance the spermatozoa of most animal phyla. Flowering plants do not produce flagellate cells, but ferns, mosses, green algae, and some gymnosperms and closely related plants do so.^[2] Likewise, most fungi do not produce cells with flagellae, but the primitive fungal chytrids do.^[3] Many protists take the form of single-celled flagellates.

Flagella are generally used for propulsion. They may also be used to create a current that brings in food. In most such organisms, one or more flagella are located at or near the anterior of the cell (e.g., Euglena). Often there is one directed forwards and one trailing behind. Many parasites that affect human health or economy are flagellates in at least one stage of life cycle, such as Naegleria, Trichomonas and Plasmodium.^[4][5] Flagellates are the major consumers of primary and secondary production in aquatic ecosystems - consuming bacteria and other protists.^{[citation needed]}

An overview of the occurrence of flagellated cells in eukaryote groups, as specialized cells of multicellular organisms or as life cycle stages, is given below (see also the article flagellum):^[6][7][8]

• Archaeplastida: most green algae (zoospores and male gametes, except in Zygnematophyceae), bryophytes (male gametes), pteridophytes (male gametes), some gymnosperms (cycads and Ginkgo, as male gametes)
• Stramenopiles: centric diatoms (male gametes), brown algae (zoospores and gametes), oomycetes (assexual zoospores and gametes), hyphochytrids (zoospores), labyrinthulomycetes (zoospores), some chrysophytes, some xanthophytes, eustigmatophytes
• Alveolata: some apicomplexans (gametes)
• Rhizaria: some radiolarians (probably gametes),^[9] foraminiferans (as gametes)
  • Cercozoa: plasmodiophoromycetes (zoospores and gametes), chlorarachniophytes (zoospores)
• Amoebozoa: myxogastrids
• Opisthokonta: most metazoans (male gametes, epithelia and choanocytes), chytrid fungi (zoospores and gametes)
• Excavata: some acrasids (Pocheina, as zoospores)^[10]

In older classifications, flagellated protozoa were grouped in Flagellata (= Mastigophora), sometimes divided into Phytoflagellata (= Phytomastigina, mostly autotrophic) and Zooflagellata (= Zoomastigina, heterotrophic). They were sometimes grouped with Sarcodina (ameboids) in the group Sarcomastigophora.

The autotrophic flagellates were grouped similarly to the botanical schemes used for the corresponding algae groups. The colourless flagellates were customarily grouped in three groups, highly artificial:^[11]

• Protomastigineae, in which absorption of food-particles in holozoic nutrition occurs at a localised point of the cell surface, often at a cytostome, although many groups were merely saprophytes; it included the majority of colourless flagellates, and even many "apochlorotic" algae;
• Pantostomatineae (or Rhizomastigineae), in which the absorption takes place at any point on the cell surface; roughly corresponds to "amoeboflagellates";
• Distomatineae, a group of binucleate "double individuals" with symmetrically distributed flagella and, in many species, two symmetrical mouths; roughly corresponds to current Diplomonadida.

Presently, these groups are known to be highly polyphyletic. In modern classifications of the protists, the principal flagellated taxa are placed in the following eukaryote groups, which include also non-flagellated forms (where "A", "F", "P" and "S" stands for autotrophic, free-living heterotrophic, parasitic and symbiotic, respectively):^[12][13]

• Archaeplastida: volvocids (A/F), prasinophytes (A), glaucophytes (A)
• Stramenopiles: bicosoecids (F), proteromonads (F), opalines (F), most chrysophytes (A/F), part of xanthophytes (A), raphidophytes/chloromonads (A), silicoflagellates (A), ciliophryids (F), pedinellids (A/F)
• Alveolata: dinoflagellates (A/F), Colpodella (F)
• Rhizaria
  • Cercozoa: cercomonads (F), spongomonads (F), thaumatomonads (F), glissomonads (F), cryomonads (F), heliomonads/dimorphids (F), ebriids (F)
• Amoebozoa: Multicilia (F), phalansteriids (F), some archamoebae (F/S)
• Opisthokonta: choanoflagellates (F)
• Excavata
  • Discoba: jakobids (F), kinetoplastids (bodonids, F/P, trypanosomatids, P), euglenids (F/A), some heteroloboseans (P/F/S)
  • Metamonada: diplomonads (P/F), retortamonads (S), Preaxostyla/anaeromonads (oxymonads, S, Trimastix, F, Paratrimastix, F), parabasalids (trichomonads, P/S, hypermastigids, S)
• Eukaryota incertae sedis : haptophytes (F/A), cryptophytes (F/A), kathablepharids (F), Apusozoa (apusomondas, F, ancyromonads, F, spironemids/hemimastigids, F), collodictyonids/diphylleids (F), Phyllomonas (F), and about a hundred genera^[14]

Although the taxonomic group Flagellata was abandoned, the term "flagellate" is still used as the description of a level of organization and also as an ecological functional group. Another term used is "monadoid", from monad.^[15] as in Monas, and Cryptomonas and in the groups as listed above.

The amoeboflagellates (e.g., the rhizarian genus Cercomonas, some amoebozoan Archamoebae, some excavate Heterolobosea) have a peculiar type of flagellate/amoeboid organization, in which cells may present flagella and pseudopods, simultaneously or sequentially, while the helioflagellates (e.g., the cercozoan heliomonads/dimorphids, the stramenopile pedinellids and ciliophryids) have a flagellate/heliozoan organization.^[16]

Wikispecies has information related to Flagellata.

Wikispecies has information related to Mastigophora.

• Flagellata at the U.S. National Library of Medicine Medical Subject Headings (MeSH)
• Leadbeater, B.S.C. & Green, J.C., eds. (2000). The Flagellates. Unity, diversity and evolution. Taylor and Francis, London.
• "Flagellata" . Encyclopædia Britannica (11th ed.). 1911.