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Natrinema - Wikipedia

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Natrinema
Scientific classification
Domain:	Archaea
Kingdom:	Euryarchaeota
Phylum:	Euryarchaeota
Class:	Halobacteria
Order:	Natrialbales
Family:	Natrialbaceae
Genus:	Natrinema McGenity et al. 1998^[1]
Type species
Natrinema pellirubrum McGenity et al. 1998
Species
"N. aidingensis" "N. ajinwuensis" N. altunense N. amylolyticum "N. caseinilyticum" N. ejinorense N. gari "N. gelatinilyticum" N. halophilum N. hispanicum N. limicola N. longum N. mahii "N. marinum" N. pallidum N. pellirubrum N. saccharevitans N. salaciae N. salifodinae N. salinisoli N. salsiterrestre N. soli N. thermotolerans N. versiforme "N. xinjiang" "N. zhouii"

Natrinema (common abbreviation Nnm.) is a genus of the Natrialbaceae.^[2]

Taxonomy

As of 2022, there are 18 species validly published in the genus Natrinema.^[1]

Natrinema is related to the genus Haloterrigena, established in 1999, resulting in confusion about taxon limits and several species apparently being assigned to the wrong genus.^[3] Based on phylogenomic analysis, eight species from Haloterrigena as well as Halopiger salifodinae were transferred to Natrinema in 2022.^[4]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)^[1] and National Center for Biotechnology Information (NCBI).^[2]

16S rRNA based LTP_08_2023^[5]^[6]^[7]

53 marker proteins based GTDB 08-RS214^[8]^[9]^[10]

	Halosolutus

	Halostagnicola

Natrinema 2

	N. soli Rasooli et al. 2017

	"N. zhouii" Hu et al. 2023

N. salaciae

	N. ejinorense

	N. longum (Cui et al. 2006) de la Haba et al. 2022

Natrinema 3

	N. hispanicum

	N. limicola

Haloterrigena

Natrinema 4

"N. marinum" Hu et al. 2023

N. halophilum

	"N. caseinilyticum" Hu et al. 2023

	"N. gelatinilyticum" Hu et al. 2023

Natrinema

N. amylolyticum

	N. salinisoli

	N. salsiterrestre Straková et al. 2023

N. versiforme

N. gari

	N. altunense

	N. pallidum

N. pellirubrum

	Haloterrigena jeotgali

	N. thermotolerans

	N. mahii

	N. saccharevitans

Natrinema

N. salifodinae (Zhang et al. 2013) de la Haba et al. 2022

N. halophilum Bao et al. 2022

	N. hispanicum (Romano et al. 2007) de la Haba et al. 2022

	N. limicola (Cui et al. 2006) Rinke et al. 2020

	N. mahii (Ding et al. 2017) de la Haba et al. 2022

	N. saccharevitans (Xu et al. 2005) Rinke et al. 2020

	N. pellirubrum McGenity et al. 1998

	N. thermotolerans (Montalvo-Rodrguez et al. 2000) Rinke et al. 2020

N. salaciae Albuquerque et al. 2012

	N. ejinorense Castillo et al. 2006

	N. salinisoli Bao et al. 2022

N. versiforme Xin et al. 2000

N. amylolyticum Bao et al. 2022

N. gari Tapingkae et al. 2008

	N. altunense Xu et al. 2005

	N. pallidum McGenity et al. 1998

Note: Unassigned Natrinema

"N. aidingensis" Liu et al. 2003a
"N. ajinwuensis" Mahansaria et al. 2018
"N. xinjiang" Habdin & Tohty 2005
"N. zhouii" Hu et al. 2023

References

^ ^a ^b ^c J.P. Euzéby. "Natrinema". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2023-10-10.
^ ^a ^b Sayers; et al. "Natrinema". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2023-10-10.
^ Tindall, B. J. (2003). "Taxonomic problems arising in the genera Haloterrigena and Natrinema". Int. J. Syst. Evol. Microbiol. 53 (Pt 5): 1697–1698. Published online 28 February 2003. doi:10.1099/ijs.0.02529-0. PMID 13130070.
^ de la Haba, Rafael; Minegishi, Hiroaki; Kamekura, Masahiro; Shimane, Yasuhiro; Ventosa, Antonio (2021). "Phylogenomics of Haloarchaea: The Controversy of the Genera Natrinema-Haloterrigena". Frontiers in Microbiology. 12: 740909. doi:10.3389/fmicb.2021.740909. PMC 8530250. PMID 34690986.
^ "The LTP". Retrieved 20 November 2023.
^ "LTP_all tree in newick format". Retrieved 20 November 2023.
^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
^ "ar53_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.

Xin H; Itoh T; Zhou P; Suzuki K; et al. (2000). "Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China". Int. J. Syst. Evol. Microbiol. 50 (3): 1297–1303. doi:10.1099/00207713-50-3-1297. PMID 10843075.
Oren A; Ventosa A (2000). "International Committee on Systematic Bacteriology Subcommittee on the taxonomy of Halobacteriaceae. Minutes of the meetings, 16 August 1999, Sydney, Australia". Int. J. Syst. Evol. Microbiol. 50 (3): 1405–1407. doi:10.1099/00207713-50-3-1405. PMID 10843089.
McGenity TJ; Gemmell RT; Grant WD (1998). "Proposal of a new halobacterial genus Natrinema gen. nov., with two species Natrinema pellirubrum nom. nov. and Natrinema pallidum nom. nov". Int. J. Syst. Bacteriol. 48 (4): 1187–1196. doi:10.1099/00207713-48-4-1187. PMID 9828420.
Feng, Jie; Wang, Jian; Du, Xin; Tang, Wei; et al. (Mar 2014). "Proteomic Analysis of the Secretome of Haloarchaeon Natrinema sp. J7−2". Journal of Proteome Research. 13 (3): 1248–1258. doi:10.1021/pr400728x. PMID 24512091.^{[permanent dead link‍]}

Scientific books

Gibbons, NE (1974). "Family V. Halobacteriaceae fam. nov.". In RE Buchanan; NE Gibbons (eds.). Bergey's Manual of Determinative Bacteriology (8th ed.). Baltimore: The Williams & Wilkins Co.

Prokaryotes: Archaea classification

(major groups

Hadesarchaea	"Hadarchaeia" "Hadarchaeales" "Persephonarchaeia"
"Hydrothermarchaeota"	"Hydrothermarchaeia" "Hydrothermarchaeles"
"Methanobacteriota"	Methanobacteria Methanobacteriales Methanococci Methanococcales Methanopyri Methanopyrus "Theionarchaeia" Thermococci "Methanofastidiosales" Thermococcales
"Halobacteriota"	Archaeoglobia Archaeoglobales "Mnemosynellales" Halobacteria Halobacteriales "Hikarchaeia" "Hikarchaeales" "Methanocellia" Methanocellales "Methanoliparia" "Methanoliparales" Methanomicrobia Methanomicrobiales Methanonatronarchaeia Methanonatronarchaeales Methanosarcinia Methanosarcinales Methanotrichales "Syntropharchaeia" "Methanophagales" "Syntropharchaeales"
"Thermoplasmatota"	"Izemarchaea" "Thermoprofundales" "Poseidoniia" "Poseidoniales" Thermoplasmata "Aciduliprofundales" "Gimiplasmatales" "Lunaplasmatales" Methanomassiliicoccales "Natronoplasmatales" "Sysuiplasmatales" Thermoplasmatales

DPANN

"Aenigmatarchaeota"
- "Aenigmatarchaeia"
"Altarchaeota"
- "Altarchaeia"
"Iainarchaeota"
- "Iainarchaeia"
"Huberarchaeota"
- "Huberarchaeia"
"Micrarchaeota"
- "Micrarchaeia"
"Nanohalarchaeota"
- "Nanohalarchaeia"
"Nanoarchaeota"
- "Nanoarchaeia"
- "Nanohalobiia"
"Undinarchaeota"
- "Undinarchaeia"

Proteoarchaeota

TACK

Thermoproteota	Korarchaeia "Korarchaeales" Bathyarchaeia "Hecatellales" Nitrososphaeria "Caldarchaeales" Conexivisphaerales "Geothermarchaeales" Nitrososphaerales "Culexarchaeia" "Culexarchaeles" "Methanomethylicia" "Methanomethylicales" "Nezhaarchaeales" Thermoproteia "Gearchaeales" "Marsarchaeales" Sulfolobales Thermoproteales

Asgard

Lokiarchaeota	"Baldrarchaeia" "Freyrarchaeia" "Hermodarchaeia" "Jordarchaeia" "Lokiarchaeia" "Helarchaeales" "Lokiarchaeales" "Sigynarchaeales" Odinarchaeia Thorarchaeia
Heimdallarchaeota	Heimdallarchaeia "Gerdarchaeales" "Heimdallarchaeales" "Hodarchaeales" "Kariarchaeales" "Njordarchaeia" "Sifarchaeia" "Borrarchaeales" "Sifarchaeales" "Wukongarchaeia"

Source:
Alternative views: Wikispecies

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