mir-390 microRNA precursor family

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mir-390 microRNA precursor family - Wikipedia

From Wikipedia, the free encyclopedia

mir-390
Identifiers
Symbol	mir-390
Rfam	RF00689
miRBase family	MIPF0000101
Other data
RNA type	microRNA
Domain(s)	Eukaryota;
PDB structures	PDBe

In molecular biology mir-390 microRNA is a short RNA molecule. MicroRNAs function to regulate the expression levels of other genes by several mechanisms.

References

^ Mendoza-Soto AB, Sánchez F, Hernández G (2012). "MicroRNAs as regulators in plant metal toxicity response". Frontiers in Plant Science. 3: 105. doi:10.3389/fpls.2012.00105. PMC 3356851. PMID 22661980.
^ Zhang J, Zhang S, Han S, Wu T, Li X, Li W, Qi L (August 2012). "Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis". Planta. 236 (2): 647–57. doi:10.1007/s00425-012-1643-9. PMID 22526500. S2CID 6776890.
^ Jouannet V, Moreno AB, Elmayan T, Vaucheret H, Crespi MD, Maizel A (April 2012). "Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis". The EMBO Journal. 31 (7): 1704–13. doi:10.1038/emboj.2012.20. PMC 3321200. PMID 22327216.
^ Li F, Orban R, Baker B (June 2012). "SoMART: a web server for plant miRNA, tasiRNA and target gene analysis". The Plant Journal. 70 (5): 891–901. doi:10.1111/j.1365-313X.2012.04922.x. PMID 22268718.
^ Maunoury N, Vaucheret H (2011). Bendahmane M (ed.). "AGO1 and AGO2 act redundantly in miR408-mediated Plantacyanin regulation". PLOS ONE. 6 (12): e28729. Bibcode:2011PLoSO...628729M. doi:10.1371/journal.pone.0028729. PMC 3236769. PMID 22174881.
^ Pérez-Quintero AL, Sablok G, Tatarinova TV, Conesa A, Kuo J, López C (April 2012). "Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua". Biotechnology Letters. 34 (4): 737–45. doi:10.1007/s10529-011-0808-0. PMID 22160362. S2CID 14045457.
^ Donaire L, Pedrola L, Rosa R, Llave C (2011). Baxter I (ed.). "High-throughput sequencing of RNA silencing-associated small RNAs in olive (Olea europaea L.)". PLOS ONE. 6 (11): e27916. Bibcode:2011PLoSO...627916D. doi:10.1371/journal.pone.0027916. PMC 3225373. PMID 22140484.
^ Budak H, Akpinar A (November 2011). "Dehydration stress-responsive miRNA in Brachypodium distachyon: evident by genome-wide screening of microRNAs expression". OMICS. 15 (11): 791–9. doi:10.1089/omi.2011.0073. PMID 22122669.
^ Zhang L, Chao JT, Cui MM, Chen YQ, Zong P, Sun YH (July 2011). "[Bioinformatic prediction of conserved microRNAs and their target genes in eggplant (Solanum melongena L.)]". Yi Chuan = Hereditas. 33 (7): 776–84. doi:10.3724/sp.j.1005.2011.00776. PMID 22049693.
^ Rajeswaran R, Pooggin MM (January 2012). "RDR6-mediated synthesis of complementary RNA is terminated by miRNA stably bound to template RNA". Nucleic Acids Research. 40 (2): 594–9. doi:10.1093/nar/gkr760. PMC 3258149. PMID 21930511.
^ Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL (May 2011). "MicroRNAs in the shoot apical meristem of soybean". Journal of Experimental Botany. 62 (8): 2495–506. doi:10.1093/jxb/erq437. hdl:10536/DRO/DU:30106047. PMID 21504877.
^ Douglas RN, Wiley D, Sarkar A, Springer N, Timmermans MC, Scanlon MJ (May 2010). "ragged seedling2 Encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves". The Plant Cell. 22 (5): 1441–51. doi:10.1105/tpc.109.071613. PMC 2899878. PMID 20453116.
^ Marin E, Jouannet V, Herz A, Lokerse AS, Weijers D, Vaucheret H, Nussaume L, Crespi MD, Maizel A (April 2010). "miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth". The Plant Cell. 22 (4): 1104–17. doi:10.1105/tpc.109.072553. PMC 2879756. PMID 20363771.
^ Wang J, Gao X, Li L, Shi X, Zhang J, Shi Z (June 2010). "Overexpression of Osta-siR2141 caused abnormal polarity establishment and retarded growth in rice". Journal of Experimental Botany. 61 (6): 1885–95. doi:10.1093/jxb/erp378. PMC 2852654. PMID 20080824.
^ Cuperus JT, Montgomery TA, Fahlgren N, Burke RT, Townsend T, Sullivan CM, Carrington JC (January 2010). "Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing" (PDF). Proceedings of the National Academy of Sciences of the United States of America. 107 (1): 466–71. Bibcode:2010PNAS..107..466C. doi:10.1073/pnas.0913203107. PMC 2806713. PMID 20018656.
^ Yoon EK, Yang JH, Lim J, Kim SH, Kim SK, Lee WS (March 2010). "Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development". Nucleic Acids Research. 38 (4): 1382–91. doi:10.1093/nar/gkp1128. PMC 2831332. PMID 19969544.
^ Krasnikova MS, Milyutina IA, Bobrova VK, Ozerova LV, Troitsky AV, Solovyev AG, Morozov SY (2009). "Novel miR390-dependent transacting siRNA precursors in plants revealed by a PCR-based experimental approach and database analysis". Journal of Biomedicine & Biotechnology. 2009: 952304. doi:10.1155/2009/952304. PMC 2762245. PMID 19859540.
^ Aly R, Cholakh H, Joel DM, Leibman D, Steinitz B, Zelcer A, Naglis A, Yarden O, Gal-On A (August 2009). "Gene silencing of mannose 6-phosphate reductase in the parasitic weed Orobanche aegyptiaca through the production of homologous dsRNA sequences in the host plant". Plant Biotechnology Journal. 7 (6): 487–98. doi:10.1111/j.1467-7652.2009.00418.x. PMID 19490480.
^ Tedder P, Zubko E, Westhead DR, Meyer P (June 2009). "Small RNA analysis in Petunia hybrida identifies unusual tissue-specific expression patterns of conserved miRNAs and of a 24mer RNA". RNA. 15 (6): 1012–20. doi:10.1261/rna.1517209. PMC 2685514. PMID 19369427.
^ Li H, Zhang Z, Huang F, Chang L, Ma Y (June 2009). "MicroRNA expression profiles in conventional and micropropagated strawberry (Fragaria x ananassa Duch.) plants". Plant Cell Reports. 28 (6): 891–902. doi:10.1007/s00299-009-0693-3. PMID 19277667. S2CID 10100284.
^ Felippes FF, Weigel D (March 2009). "Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173". EMBO Reports. 10 (3): 264–70. doi:10.1038/embor.2008.247. PMC 2658565. PMID 19180117.
^ Nogueira FT, Chitwood DH, Madi S, Ohtsu K, Schnable PS, Scanlon MJ, Timmermans MC (January 2009). Copenhaver GP (ed.). "Regulation of small RNA accumulation in the maize shoot apex". PLOS Genetics. 5 (1): e1000320. doi:10.1371/journal.pgen.1000320. PMC 2602737. PMID 19119413.
^ Abdurakhmonov IY, Devor EJ, Buriev ZT, Huang L, Makamov A, Shermatov SE, Bozorov T, Kushanov FN, Mavlonov GT, Abdukarimov A (September 2008). "Small RNA regulation of ovule development in the cotton plant, G. hirsutum L". BMC Plant Biology. 8: 93. doi:10.1186/1471-2229-8-93. PMC 2564936. PMID 18793449.
^ Takeda A, Iwasaki S, Watanabe T, Utsumi M, Watanabe Y (April 2008). "The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins". Plant & Cell Physiology. 49 (4): 493–500. doi:10.1093/pcp/pcn043. PMID 18344228.
^ Montgomery TA, Howell MD, Cuperus JT, Li D, Hansen JE, Alexander AL, Chapman EJ, Fahlgren N, Allen E, Carrington JC (April 2008). "Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation". Cell. 133 (1): 128–41. doi:10.1016/j.cell.2008.02.033. PMID 18342362. S2CID 11174355.
^ Axtell MJ, Snyder JA, Bartel DP (June 2007). "Common functions for diverse small RNAs of land plants". The Plant Cell. 19 (6): 1750–69. doi:10.1105/tpc.107.051706. PMC 1955733. PMID 17601824.
^ Axtell MJ, Jan C, Rajagopalan R, Bartel DP (November 2006). "A two-hit trigger for siRNA biogenesis in plants". Cell. 127 (3): 565–77. doi:10.1016/j.cell.2006.09.032. PMID 17081978. S2CID 1413712.
^ Talmor-Neiman M, Stav R, Klipcan L, Buxdorf K, Baulcombe DC, Arazi T (November 2006). "Identification of trans-acting siRNAs in moss and an RNA-dependent RNA polymerase required for their biogenesis". The Plant Journal. 48 (4): 511–21. doi:10.1111/j.1365-313X.2006.02895.x. PMID 17076803.
^ Fahlgren N, Montgomery TA, Howell MD, Allen E, Dvorak SK, Alexander AL, Carrington JC (May 2006). "Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis". Current Biology. 16 (9): 939–44. doi:10.1016/j.cub.2006.03.065. PMID 16682356. S2CID 401176.
^ Allen E, Xie Z, Gustafson AM, Carrington JC (April 2005). "microRNA-directed phasing during trans-acting siRNA biogenesis in plants". Cell. 121 (2): 207–21. doi:10.1016/j.cell.2005.04.004. PMID 15851028. S2CID 18056486.

External links

Page for MIR390 microRNA precursor family at Rfam

v t e miRNA precursor families
1-100	1 2 3 5 6 7 8/141/200 9/79 10 11 14 15 16 17 19 21 22 23 24 25 26 28 29 30 31 32 33 34 42 46/47/281 48 52 58 61 62 67 71 84 92 96
101-200	101 103/107 122 124 126 127 129 130 132 133 134 135 137 138 141 143 144 145 146 148/152 150 153 154 155 156 160 166 172 181 184 185 186 187 188 190 191 192/215 193 194 196 198 199 200
201-300	202 203 203a 205 208 210 212 214 216 218 219 221 223 224 241 275 277 278 279 281 282 296 299
301-400	301 305 322 326 330 331 337 338 339 340 344 345 346 350 351 361 363 365 367 370 374 383 384 390 394 395 396 397 398 399
401-500	403 408 423 425 430 431 432 433 434 444 448 449 451 452 454 455 474 484 488 489 491 492 497 498 500
501-600	503 504 505 506 529 535 541 542 544 548 549 550 552 558 562 569 572 575 580 584 589 590 592 598
601+	601 605 612 615 612 612 624 625 632 633 636 638 650 652 657 661 663 671 672 675 708 711 720 744 764 765 767 786 802 824 828 854 872 873 874 885 938 939 3180
Other	BART1 BART2 BHRF1-1 BHRF1-2 BHRF1-3 Let-7 Lin-4 Lsy-6

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